FastQCFastQC Report
Sun 21 May 2023
EGAF00007936614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418914
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23290.5559613667721776No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17020.4062886415827592No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15980.3814625436247058No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15700.37477859417446063No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15150.3616494077543362No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12260.29266150092859156No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG12190.29099051356603023No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG12130.28955823868383485No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11180.26688055304907454No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10530.2513642418252911No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9970.2379963429248008No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9940.2372802054837031No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9540.22773170626906716No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7940.1895377094105234No Hit
GCTGTTACCACCGAAGTCGCATTCGGTCTGG7750.18500217228357133No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG7650.18261504747991236No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7420.17712466043149666No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6990.16686002377576306No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG6130.14633075046429578No Hit
ATGGGTCTGATCTACAACCGTATGGGCACGG6040.14418233814100267No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA6020.1437049131802709No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG5870.1401242259747824No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5780.1379758136514893No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5660.13511126388709854No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC5550.13248542660307366No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC4950.11816267778111975No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4900.11696911537929025No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC4890.11673040289892436No Hit
ATGGAAGACATCAAGCAGATGGAAGCAGAAT4590.1095690284879474No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4440.10598834128245893No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4410.10527220384136124No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG4390.10479477888062944No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG4240.10121409167514095No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4220.10073666671440917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)