FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007937974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522434
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41840.8008667123502681No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21350.40866406091487156No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16020.30664160448975375No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15870.3037704284177523No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13180.2522806708598598No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10410.1992596193968999No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10150.19428291420543073No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9910.18968903249022845No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9280.1776300929878224No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7760.14853550879154112No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7120.13628515755100165No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC6920.13245692278833307No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6700.12824586454939763No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6260.11982374807152672No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGT5690.10891327899792128No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5540.10604210292591984No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA5410.10355375033018524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)