FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007937978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509464
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46840.9193976414427713No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34960.6862113907950316No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT31600.6202597239451659No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18500.3631267371197965No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG16710.32799177174442157No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15390.30208218833911715No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14510.2848091327355809No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12860.2524221534789505No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12430.24398191039994976No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11910.23377510481604197No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10950.21493177143036604No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10400.20413611167815587No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10390.2039398269553884No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10260.2013881255594115No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10160.1994252783317369No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9790.19216274358934093No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9260.1817596532826657No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7910.15526121570905893No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7880.15467236154075656No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG7340.14407298651131384No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7050.13838072955105757No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6710.13170704897696403No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6620.12994048647205692No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6510.12778135452161488No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6380.12522965312563794No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5840.1146302780961952No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5810.11404142392789285No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5630.11050829891807862No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5560.10913430585870641No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5550.10893802113593895No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5230.10265691000738031No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5130.10069406277970575No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5110.10030149333417082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)