FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007937980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486314
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22470.46204715471896757No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10280.211386059212772No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9570.1967864383916564No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8160.1677928252116945No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7480.15381008977738664No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7100.14599620821115575No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6900.14188363896577108No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6000.12337707736154008No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5380.1106281127008476No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5280.10857182807815526No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5270.10836619961588603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)