FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007937982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460003
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40560.8817333799996956No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21380.46477957752449445No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9270.20152042486679433No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7700.16739021267252605No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7090.15412942959067658No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6470.14065125662223943No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6280.13652084877707318No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5380.11695575898418052No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5340.11608619943782976No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5290.11499925000489128No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4620.10043412760351562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)