FastQCFastQC Report
Wed 31 May 2023
EGAF00007937984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489420
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCACGAAGAACAGCCGCGTTACGAAGATC22380.4572759592987618No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC18830.3847411221445793No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC16440.3359078092435944No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14880.3040333455927424No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14650.29933390543909116No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC14170.2895263781619059No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12990.26541620693882556No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12190.24907032814351682No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11670.23844550692656616No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10660.21780883494748887No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10340.21127048342936536No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10150.20738833721547956No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9260.18920354705569858No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9190.18777328266110907No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9070.18532140084181276No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8720.17817007886886518No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8290.16938416901638675No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7580.15487720158555024No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7430.15181234931142987No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7040.14384373339871687No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6890.14077888112459647No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6460.131992971272118No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6380.13035838339258712No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6100.12463732581422908No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5980.12218544399493277No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5620.11482979853704384No Hit
GCTGGTTGGACCGAGTCTTCCCCGCTGCCGA5600.11442115156716114No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5570.11380818111233705No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA5460.1115606227779821No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5300.10829144701892035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)