FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007937987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513830
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT27740.5398672712764921No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20740.40363544362921583No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15200.2958176828912286No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15000.2919253449584493No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14890.28978455909542067No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14130.27499367495085925No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12790.24891501080123776No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG12220.23782184769281667No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12170.23684876320962187No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11860.23081563941381392No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10710.20843469630033282No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG10390.20220695560788587No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG10350.20142848802133No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10320.2008446373314131No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10000.1946168966389662No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9770.19014070801626998No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9300.18099371387423857No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9060.17632290835490336No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8890.17301442111204093No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8830.17184671973220714No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8790.17106825214565127No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8750.1702897845590954No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8250.1605589397271471No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7620.14829807523889224No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7360.14323803592627912No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7300.14207033454644533No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7000.13623182764727634No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6960.13545336006072048No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6500.126500982815328No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6320.12299787867582665No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG6310.12280326177918767No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6300.12260864488254872No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6070.11813245625985247No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5930.11540781970690696No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5880.11443473522371211No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5650.1099585466010159No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5650.1099585466010159No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5630.10956931280773796No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5520.10742852694470935No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5380.10470389039176381No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5310.10334157211529106No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5280.10275772142537415No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5270.1025631045287352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)