FastQCFastQC Report
Sun 21 May 2023
EGAF00007937988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513830
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47970.9335772531771208No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34380.6690928906447657No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27490.535001848860518No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27450.5342233812739622No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16330.3178093922114318No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15060.2930930463382831No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC14870.28939532530214274No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13510.26292742735924335No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13130.2555319852869626No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12650.24619037424829224No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12300.2393787828659284No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA11050.21505167078605764No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10800.21018624837008348No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG10610.20648852733394313No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10610.20648852733394313No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC10440.2031800400910807No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10220.19889846836502345No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10220.19889846836502345No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10030.1952007473288831No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8890.17301442111204093No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8800.17126286904229027No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8470.16484051145320436No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC8160.1588073876573964No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7900.1537473483447833No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7850.15277426386158846No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7790.15160656248175466No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7580.14751960765233638No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7390.14382188661619602No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7350.14304341902964013No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7160.1393456979934998No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6890.13409104178424772No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6840.13311795730105289No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG6780.1319502559212191No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6640.12922561936827356No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6490.12630636591868907No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6480.12611174902205008No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6420.12494404764221628No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6150.1196893914329642No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6010.1169647548800187No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5980.11638090419010179No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5900.11482396901699005No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5680.11054239729093279No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5500.10703929315143142No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5360.10431465659848588No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5180.10081155245898449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)