FastQCFastQC Report
Wed 31 May 2023
EGAF00007937990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504492
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28270.5603656747777963No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25390.5032785455468074No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16330.32369195150765523No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14870.29475194849472336No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12570.24916153278941983No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10080.19980495230846076No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9940.19702988352639883No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9940.19702988352639883No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9170.18176700522505806No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8950.17740618285324644No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8830.17502755246862192No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8470.1678916613147483No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6730.13340152073769257No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6390.1266620679812564No Hit
CGTGAAGAACGCGAGCAGGAACAGGGTTCCA6380.1264638487825377No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6100.12091371121841377No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6100.12091371121841377No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5960.1181386424363518No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5630.11159740887863435No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5520.10941699769272853No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5480.10862412089785368No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5290.10485795612219817No Hit

[OK]Adapter Content

Adapter graph