FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007937993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502682
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG35910.7143681293541444No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA34310.6825388615466637No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA33090.6582690448434597No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG27990.5568132537071151No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG20640.4105975547165007No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20440.40661889624056563No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT19790.39368825619377656No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC16480.327841458417051No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT15730.3129214891322944No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG15340.30516310510422096No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG13800.2745274348395208No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG13590.27034984343978896No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA13080.2602042643261545No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12860.25582774000262587No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT12640.25145121567909734No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT12400.24667682550797523No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA12230.24329496580343038No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG11630.23135899037562513No Hit
CTGTTCCGGGATCTGCGGCAGCTGCTGACAGCACTGTTGCTGCA11580.23036432575664137No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT10840.21564328939568156No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10560.21007316752937244No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10460.20808383829140492No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT10410.20708917367242113No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT10380.2064923749010309No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG10250.20390624689167308No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9940.1977393262539737No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9760.19415853362563212No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG9640.19177133854007106No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9340.18580335082616842No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9070.18043216188365607No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8720.17346950955076967No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8600.17108231446520863No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT8430.16770045476066378No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7890.15695807687563906No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7830.15576447933285856No Hit
GGTACCCAGCTGATTGCGCTCACGTTCCAGCGCTTCAATGTGAC7750.1541730159424845No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG7690.152979418399704No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG7570.15059222331414293No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7370.14661356483820787No Hit
CTGCGGCAGCTGTTGGCAGCACTGCTGTTGCATAACGTGGCAAG7230.14382850390505328No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7090.14104344297189872No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7040.14004877835291496No Hit
CAGCTGCTGACAGCATTGCTGCTGCATAACGTGACAGGAAGACT6860.1364679857245734No Hit
TTGCTGCGGAATCTGTGGCAGTTGCTGACAGCATTGCTGCTGCA6800.13527438818179285No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6720.13368292479141883No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT6530.1299031992392805No Hit
CACATCTGCGCTCGCAGAGATGCCAGCGAAGTAACCGGTTGCAT6400.1273170712299227No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6160.12254268105880059No Hit
GTGGCAGGAGCTCTGCTGCAGCATCTGGGAGCGTGCCAGACGCT6110.12154801643981682No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6090.12115015059222331No Hit
CGGTGCCTGTGGCGGAGGCGGTTCCTGATAGCCCTGGTATGGTG6080.12095121766842656No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA6080.12095121766842656No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6050.1203544188970363No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5820.11577896164971094No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5810.1155800287259142No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5700.11339176656414991No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5670.11279496779275963No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5660.11259603486896289No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5630.11199923609757263No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5570.11080563855479209No Hit
CTGCTGCAGTACGTGGCAAGAAGACTGCTGCAGCATCTGGCTAC5500.1094131080882148No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5500.1094131080882148No Hit
CAGACGAGAACGTTTGGACAGAGAACGAGTGTAGGAAACGTTGC5480.10901524224062131No Hit
TTCTTCGATGGCTTTGATAACGCTGAAGTCGGTAACGATAGCAC5360.10662804715506026No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5350.1064291142312635No Hit
CTGCGGCAGCTGCTGGCAGCACTGCTGCTGCATGACGTGGCAAG5320.10583231545987323No Hit
CAGGGTCGGAATCTGATGACGGGTTTTGCATGCAACACCGTTCT5250.10443978499329595No Hit
CAGCGGACGCAGATTACCGATTTCACCGTTTTCACCCTGGTCCT5250.10443978499329595No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5210.10364405329810894No Hit
GTCATCCCAAGAACCGTTGCGTTCGGTATATTCAGTCAGCGGTG5150.10245045575532842No Hit
ACCGGCCGGAGCTGCTGCCTTTTCCGGTTTATCAGCCACTACCG5110.10165472406014141No Hit
GTGCTGGGAACGCGGGGTCCAAGGGCCAGCGTAGCCCGGATAGC5070.10085899236495438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)