FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007937995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463318
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26230.5661338432782668No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21320.46015911317928504No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT20250.4370648237279795No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18630.4020996378297411No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13530.29202405259454634No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13060.2818798319944401No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT10440.22533119801086943No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10310.22252534975977625No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8740.18863933626580448No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8620.1860493224955646No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8440.1821643018402048No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA8140.1756892674146051No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7750.16727172266132548No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7530.16252336408255239No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7360.15885417790804587No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7240.156264164137806No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6990.15086830211647292No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6900.148925791788793No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6560.14158741943978004No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5910.12755817818431403No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5820.12561566785663408No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5810.12539983337578078No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5040.10878057835007489No Hit
GTAGTTACCCGGCAGGCATTCGAAACGCAGGGTCGGGCTAGACT4730.10208970944362188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)