FastQCFastQC Report
Sun 21 May 2023
EGAF00007937998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007937998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500690
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15570.3109708602129062No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10490.20951087499251034No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10010.19992410473546507No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9720.19413209770516687No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9120.18214863488386027No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8710.17395993528930076No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8280.16537178693403104No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7570.15119135592881824No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7180.14340210509496895No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6270.12522718648265393No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5940.11863628193093531No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5880.11743793564880464No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5620.11224510175957178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)