FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences379200
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37400.9862869198312236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10610.27979957805907174No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10520.27742616033755274No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8340.2199367088607595No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7990.21070675105485234No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7050.18591772151898733No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7020.185126582278481No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6810.1795886075949367No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6300.1661392405063291No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6250.16482067510548523No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6130.16165611814345993No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5660.1492616033755274No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5280.13924050632911392No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5200.13713080168776373No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4840.12763713080168776No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4500.11867088607594937No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4190.1104957805907173No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC4150.10944092827004219No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4150.10944092827004219No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4000.10548523206751054No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG3890.102584388185654No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC3820.10073839662447256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)