FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382051
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33290.8713496365668458No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10620.277973359577648No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9470.24787266621472004No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8870.23216795663406195No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8020.20991961806146298No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7840.20520820518726557No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7490.1960471245985484No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7170.18767127948886406No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6720.17589274730337048No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6490.16987260863078488No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6300.16489945059690983No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5950.15573837000819263No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5040.13191956047752787No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4840.12668465728397518No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4750.12432895084687645No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4680.12249673472913303No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4280.11202692834202763No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC4040.1057450445097644No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC3910.10234235743395514No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT3860.10103363163556699No Hit

[OK]Adapter Content

Adapter graph