FastQCFastQC Report
Wed 31 May 2023
EGAF00007938006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469860
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39000.8300344783552547No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25980.5529306601966543No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25210.5365427999829736No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20510.43651300387349423No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18860.4013961605584642No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18300.38947771676669646No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16150.34371940578044524No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15030.3198825181969097No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13800.29370450772570555No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13080.278380794279147No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12560.2673136679010769No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11910.25347975992848937No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11510.24496658579151237No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11360.241774145490146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10240.21793725790661048No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10110.21517047631209296No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9550.20325203252032523No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8620.18345890265185374No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8540.18175626782445836No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8390.178563827523092No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7910.16834801855871961No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7870.1674967011450219No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7720.16430426084365557No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7540.16047333248201592No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7330.15600391606010303No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7060.15025752351764354No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6830.1453624483888818No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6780.1442983016217597No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6470.1377005916656025No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6350.1351466394245094No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6340.13493381007108501No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6300.1340824926573873No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5830.12407951304643937No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5760.1225897075724684No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC5700.12131273145192184No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5630.11982292597795087No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5470.11641765632316009No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5110.10875579959988083No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5090.10833014089303196No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5010.10662750606563658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)