FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446840
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27560.6167755796258169No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23420.5241249664309372No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22710.5082356100617671No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22630.5064452600483395No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20210.45228717214215386No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19080.4269984782024886No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17820.3988004654910035No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17770.3976814967326112No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16870.37754005908155047No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16770.3753021215647659No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16610.37172142153791066No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15800.35359412765195597No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15210.3403902963029272No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13500.30212156476591173No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13090.29294602094709515No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11940.26720973950407306No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10470.23431205800734045No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10270.2298361829737714No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9430.21103750783278133No Hit
ACGCAGACCGGTCACCATGCGCAGCTTTGCAGAACGTACGTATT8950.20029540775221558No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8640.1933578014501835No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8190.18328708262465312No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7790.174335332557515No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7470.1671739325038045No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7420.16605496374541223No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7240.1620266762152001No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6770.15150836988631278No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6660.1490466386178498No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6640.1485990511144929No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6180.13830453853728406No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6010.13450004475875033No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6000.13427625100707188No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5920.13248590099364427No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5850.1309193447318951No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5830.13047175722853818No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5510.12331035717482768No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5420.12129621340972159No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT5410.12107241965804315No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5370.12017724465132934No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5310.11883448214125862No Hit
ACCCAGCGGGATGGCCGGCAGAGAATAGCCATCCGGAAAAACGG5300.11861068838958015No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5130.11480619461104646No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5000.11189687583922658No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4620.10339271327544534No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4600.10294512577208843No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4580.10249753826873155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)