FastQCFastQC Report
Sun 21 May 2023
EGAF00007938010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530043
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35890.6771148755855657No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16830.3175214086404311No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16010.3020509656763697No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11310.21337891454089575No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10770.20319106185724556No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10760.20300239791865943No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT10150.19149389766490643No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7520.14187528181675826No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7250.13678135547493317No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6440.12149957644945787No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6230.11753763373914947No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6010.11338702709025494No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5800.10942508437994654No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5650.10659512530115482No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5420.10225585471367417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)