FastQCFastQC Report
Wed 31 May 2023
EGAF00007938011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences354546
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11220.31646105159838217No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7690.21689710220958633No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6200.17487152583867818No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4730.13341005116402385No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4530.12776903420148583No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4200.11846135621329813No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC3830.10802547483260282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)