FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences354546
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51171.4432541898653488No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15150.4273070349122539No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11020.3108200346358442No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5710.16105103428046008No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4770.13453825455653146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4560.12861518674586653No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4550.12833313589773965No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4090.11535879688390221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)