FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396502
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29940.7551033790497904No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18420.4645625999364442No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15680.3954582826820546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13260.3344245426252579No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10700.2698599250445143No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9890.24943127651310712No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8410.21210485697423972No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7730.19495488042935472No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6120.15434978890396517No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5630.14199171757015097No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5480.1382086345087793No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4150.10466529803128358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)