FastQCFastQC Report
Wed 31 May 2023
EGAF00007938016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380127
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48681.2806246333462237No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26600.6997661307931297No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13170.34646315573479386No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12990.34172789620311106No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11860.3120009891431022No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11620.30568730976752506No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10870.2859570617188466No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10800.28411557190097No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10320.2714882131498157No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10140.2667529536181329No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8710.2291339473386526No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8690.22860780739068784No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7990.21019290921192127No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7960.20940369928997413No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7520.19782862043474944No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7380.19414564079899613No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7340.1930933609030666No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7210.18967345124129567No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5840.15363286480570967No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5430.1428469958724321No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5300.1394270862106612No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4970.13074577706924265No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4540.11943376818800032No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4310.11338315878640559No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4250.1118047389425113No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4220.11101552902056419No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4140.10891096922870515No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4130.10864789925472276No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4100.10785868933277562No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT3810.10022966008728662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)