FastQCFastQC Report
Sun 21 May 2023
EGAF00007938018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380734
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50591.3287492054820427No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17660.46384089679408724No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15960.4191903008399565No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14350.37690355996575037No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13090.3438095888468064No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG13010.34170838433131795No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11430.30020959515042No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10940.2873397174930529No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10460.2747324904001219No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8990.2361228574280206No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7990.2098578009844143No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6770.17781443212321463No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6320.1659951567235918No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6230.16363130164366724No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5590.1468216655197592No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5250.13789154632893305No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4900.12869877657367085No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4460.1171421517384841No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4400.11556624835186771No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT4200.11031323706314644No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4080.1071614302899137No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4050.10637347859660551No Hit
ATGAACGCACCGGATGATCTGGTCCTGTTCG4020.10558552690329731No Hit

[OK]Adapter Content

Adapter graph