FastQCFastQC Report
Wed 31 May 2023
EGAF00007938019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences378936
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17820.4702641079232377No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14590.38502543965207847No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12570.33171828488187977No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10710.28263347900437014No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9970.2631051153756835No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9710.2562437984250639No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7890.20821457977072644No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7630.20135326282010682No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT7290.1923807714231427No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6900.18208879599721325No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5880.15517132180632084No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5490.14487934638039143No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5300.1398653070703232No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG5260.13880971984715096No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5080.13405957734287585No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5070.13379568053708277No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5040.1330039901197036No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4730.12482318914011864No Hit
ACGAGAGCTGGAACGAGAGCTGGCCTGGGAACCGCCACGAGAAC4690.1237676019169464No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4480.1182257689952921No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4470.11796187218949901No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4460.11769797538370595No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4380.11558680093736146No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4310.11373952329681002No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4210.11110055523887939No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4170.11004496801570714No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT3970.10476703189984589No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA3940.1039753414824667No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC3890.10265585745350139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)