FastQCFastQC Report
Wed 31 May 2023
EGAF00007938020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences378936
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51171.3503599552431018No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35050.9249583043046847No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17010.4488884666539996No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13330.3517744421221526No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12640.33356556252243125No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11330.29899508096354005No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9770.25782717925982224No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9740.25703548884244304No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7370.1944919458694872No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7220.19053349378259124No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6840.18050541516245489No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6370.16810226529018094No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5440.1435598623514261No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5180.13669854540080648No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5180.13669854540080648No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5170.13643464859501342No Hit
GAAGGCGCACTGAACACCCCGAAAGACCACA4910.12957333164439377No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4900.12930943483860072No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4890.12904553803280766No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4830.1274621571980493No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4410.11637849135474065No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4400.11611459454894757No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4400.11611459454894757No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4380.11558680093736146No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4270.11268393607363775No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4100.1081976903751557No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC3830.10107247661874301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)