FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences356345
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48981.3745106568073076No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24260.6808009092312226No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC23650.6636826670782527No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16000.4490030728647799No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15660.4394617575664034No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8520.2390941363004953No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7980.223940282591309No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7500.21047019040536558No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7330.2056995327561773No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6170.17314680997348075No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG6040.16949866000645442No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5970.167534271562671No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5700.15995734470807785No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5540.15546731397943003No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5120.14368098331672957No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4820.13526217570051496No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4730.13273653341565056No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4700.1318946526540291No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4630.1299302642102457No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4540.1274046219253813No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4520.12684336808430033No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG4260.11954706815024765No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG4140.1161795451037618No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4140.1161795451037618No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4010.11253139513673546No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA3980.111689514375114No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC3910.10972512593133059No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3870.10860261824916864No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT3800.10663822980538523No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC3780.10607697596430425No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC3700.10383196059998034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)