FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373895
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47791.2781663301194186No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28960.7745490043996309No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13280.3551799301943059No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11610.3105149841533051No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9710.25969857847791494No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7730.20674253466882414No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7470.19978871073429708No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7140.19096270343278193No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6730.17999705799756616No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6160.16475213629494911No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5410.14469302879150564No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5260.14068120729081696No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5000.13372738335628986No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4140.11072627341900802No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3950.105644632851469No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT3820.10216772088420546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)