FastQCFastQC Report
Sun 21 May 2023
EGAF00007938025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415790
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGGTCGGAACGGACCACCTGACGGAAAGAGCGGCGACCGA8800.21164530171480797No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6060.1457466509536064No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5960.1433415907068472No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5060.12169604848601458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)