FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380964
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19400.5092344683487153No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11960.3139404248170431No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11790.309478060919142No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10820.2840163375017062No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10290.2701042618200145No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9490.24910490230047985No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8880.23309289066683467No Hit
GATACCCGGGCACATGTAGCCATCCAGGTCACAGGTTTCAGTGG8640.22679308281097427No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8160.2141934670992535No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6380.16746989216828886No Hit
GATCAGAACACGATCGGCGTCACGAGCCAGTGCTTCCTCAGACG6180.16222005228840522No Hit
GTCTTCCGCCGGAACGGTGGACTGACGGGTACCACCGAAACGCG5890.1546077844625739No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5360.14069570878088217No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5250.13780829684694615No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5240.13754580485295198No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5120.1343959009250218No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4820.1265211411051963No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4470.11733392131539988No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4400.1154964773574406No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG4070.10683424155563256No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG3990.10473430560367909No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG3940.10342184563370818No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)