FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380964
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25920.6803792484329229No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19910.5226215600424187No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19710.5173717201625351No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11610.3047532050272467No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11460.3008158251173339No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11110.29162860532753754No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9120.23939269852269507No Hit
AAAAAACTGCCAGCAGGTGGTCGCCTGCCGG8620.2262680988229859No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8430.2212807509370964No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7230.18978171165779442No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6500.17061979609621908No Hit
GCGGTGGCAGAAAAACTGCGTACCAAATGGG6450.16930733612624815No Hit
GGCGCCGCAGGCGATGGCGACGGTGGCGGTT5960.15644522842053318No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5640.1480454846127193No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5550.14568305666677164No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5040.1322959649730683No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4760.12494618914123119No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA4660.12232126920128936No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4660.12232126920128936No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4600.12074631723732426No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4060.10657174956163837No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC3960.10394682962169655No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC3810.1000094497117838No Hit

[OK]Adapter Content

Adapter graph