FastQCFastQC Report
Sun 21 May 2023
EGAF00007938029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426737
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12100.2835470090477273No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8300.19449918802447408No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7730.1811420148709861No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7350.1722372327686608No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6300.14763191380170926No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6220.14575722283279866No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5690.13333739516376597No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5500.1288850041126033No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5220.12232358572141623No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4620.10826340345458678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)