FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426737
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56811.3312649242976353No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15710.36814243901981786No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14970.35080154755739484No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12110.2837813454188411No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7920.18559440592214876No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7210.16895652357306726No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6470.15161563211064427No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5620.1316970405659692No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5310.12443261306144064No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5200.12185491297918857No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4720.11060676716572503No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4480.10498269425899323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)