FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442070
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64251.4533897346574072No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26540.6003574094600402No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25260.5714027190263985No Hit
GCTGTTACCACCGAAGTCGCATTCGGTCTGG14910.3372769018481236No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13080.29588074286877647No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11110.25131766462324967No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG10970.24815074535707013No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC10120.22892302124097996No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9840.2225891827086208No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC9690.21919605492342842No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8670.19612278598412017No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8190.18526477707150452No Hit
ATGGGTCTGATCTACAACCGTATGGGCACGG8090.18300269188137624No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7950.17983577261519668No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7520.17010880629764516No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7480.16920397222159386No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6820.15427420996674734No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6760.1529169588526704No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6660.15065487366254213No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6280.14205894994005475No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6150.13911823919288802No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5970.13504648585065715No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5510.12464089397606715No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5410.12237880878593888No Hit
CCGCTGATTCGTCACGAAAACCGTATGGTTC5360.12124776619087474No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5230.11830705544370801No Hit
GGTGAAATGGGCACCCCGGGTCCTAAAGGTG5100.11536634469654126No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5060.11446151062048998No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4770.10790146356911802No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4740.10722283801207955No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)