FastQCFastQC Report
Wed 31 May 2023
EGAF00007938037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503997
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA47180.9361166832342257No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA41640.8261953940202025No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG37550.7450441173260952No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG31820.6313529644025659No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG27010.5359158883882246No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21340.42341521874138144No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG21160.41984376891132286No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT19730.39147058415030245No Hit
TGGCTGGGTCGGAACGTGTTTTTTCGGGACGCTGCTGAAGGCAG15510.30773992702337516No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA15300.3035732355549735No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG12500.24801734930961888No Hit
TTTAACAGTAATACCGTTGCCATTGGTGTCTTTGGTAACGCTGG11360.22539816705258167No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG11250.22321561437865703No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC11060.2194457506691508No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCGTCT10950.21726319799522617No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9970.19781863780935202No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9310.18472332176580417No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9290.1843264940069088No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC9160.18174711357408874No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9140.18135028581519336No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG8780.17420738615507633No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8630.1712311779633609No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8270.16408827830324388No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG8130.16131048399097614No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA8000.1587311035581561No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7550.14980247898300983No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG7430.14742151242963747No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7320.14523895975571283No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7200.1428579932023405No Hit
GAACGGACGAGTCGTCTTGCGCGGTTTTTTACGCGGAGACAGTT6910.13710399069835733No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6910.13710399069835733No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT6580.13055633267658337No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6260.12420708853425715No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6240.12381026077536177No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6230.12361184689591406No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG5950.11805625827137861No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5890.11686577499469243No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5600.11111177249070928No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5570.1105165308523662No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5510.10932604757568No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5490.10892921981678462No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT5160.10238156179501068No Hit
GACGTCATCATCTTCGTCTTCTTCGTCATCGGTACCAGTCGGTT5140.1019847340361153No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5140.1019847340361153No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT5120.1015879062772199No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5100.10119107851832453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)