FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413618
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25840.6247310320150478No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24700.5971693688379133No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19980.483054412525567No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19150.4629875875808113No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17450.4218868617903476No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16930.40931487507797054No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14190.34307017586275257No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12030.29084807721133993No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11510.2782760904989628No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9740.235482981881833No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8900.2151743879618392No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8840.21372377411041105No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC8510.20574539792755633No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8230.19897586662089173No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7840.1895468765866089No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7720.18664564888375265No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7410.17915081065137398No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7300.17649135192375573No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6720.16246875135995048No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6440.15569922005328587No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6240.15086384054852547No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6160.14892968874662127No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5450.13176409150472174No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5000.12088448761901079No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4840.11701618401520245No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4660.11266434246091804No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4160.10057589369901697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)