FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences590550
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48130.81500296333926No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33720.5709931419862839No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25820.4372195411057489No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15180.25704851409702817No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC11490.19456438912877827No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7360.12462958259249853No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5990.10143086952840573No Hit
GCTAACACCCTGAACGGTGAAAACGTACGTA5960.1009228685124037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)