FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547796
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG27330.4989083527444523No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG22890.41785628226566096No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG22480.41037174422595274No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21050.3842671359411168No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19440.3548766329071406No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG18710.34155050420229427No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC14510.2648796267223565No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14290.26086353314007404No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14010.2557521413080782No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13750.2510058488926535No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12450.2272743868155299No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11960.21832945110953714No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG11450.20901941598697327No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11090.20244762648869286No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10890.19879663232298156No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10350.18893894807556097No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10290.1878436498258476No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10130.18492285449327853No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10120.18474030478499295No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10000.18254970828556616No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9700.17707321703699916No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG9040.1650249362901518No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9030.16484238658186623No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8830.1611913924161549No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG8460.15443705320958898No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8360.15261155612673333No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8060.14713506487816633No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7860.143484070712455No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7790.14220622275445605No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7740.1412934742130282No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7370.13453913500646225No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7330.13380893617332001No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7290.13307873734017772No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6830.12468145075904169No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6760.12340360280104273No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6720.12267340396790045No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6580.12011770805190254No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6280.11464121680333555No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6140.11208552088733763No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6110.11153787176248092No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6090.11117277234590978No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6010.10971237467962526No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5870.10715667876362733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)