FastQCFastQC Report
Wed 31 May 2023
EGAF00007938050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508687
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43630.8576983488864469No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29240.5748131955406763No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26420.519376355204674No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23050.4531273651577493No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16250.3194498778227083No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15380.30234702282543097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14250.2801329697829903No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13250.26047451576313135No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12590.2474999361100244No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11680.2296107429519528No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11120.21860200870083174No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9750.19166992669362495No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9730.1912767576132278No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9390.18459288324647571No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8920.175353409857142No Hit
ACTAGCTGTCCGTTCACCCTGCCTCGTGGTG8160.1604129848020492No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7950.1562847094578788No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7940.15608812491768023No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7780.1529427722745028No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7390.1452759752067578No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7280.1431135452645733No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6640.13053213469186356No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6640.13053213469186356No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6420.12620727480749458No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT5400.10615565170723844No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5170.10163420728267088No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5160.1014376227424723No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5140.1010444536620751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)