FastQCFastQC Report
Sun 21 May 2023
EGAF00007938052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457984
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17940.391716741196199No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9180.20044368362213527No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8620.18821618222470654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7930.17315015371716042No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7470.16310613471212967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7360.16070430408049188No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6650.14520157909446618No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6330.1382144354387926No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6250.13646764952487425No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6170.13472086361095584No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5910.12904380939072108No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5340.11659795975405254No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4810.1050255030743432No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4780.10437045835662381No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4750.10371541363890441No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4690.10240532420346563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)