FastQCFastQC Report
Wed 31 May 2023
EGAF00007938054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences609215
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA73901.2130364485444383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA33240.5456201833507054No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA28110.461413458302898No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26710.4384330655023268No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26570.4361350262222697No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA20290.3330515499454216No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA19210.3153238183564095No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT18000.2954621931502015No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC17970.2949697561616178No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15960.261976477926512No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG15060.24720336826900194No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13950.22898319969140618No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13560.22258151883981844No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13350.21913445991973277No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG11950.19615406711916156No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11370.1866336186732106No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9930.16299664322119448No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG9760.16020616695255369No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9610.15774398200963535No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT9510.15610252538102312No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9260.15199888380949253No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8810.1446123289807375No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8450.1387030851177335No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8250.135420171860509No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7630.1252431407631132No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7570.12425826678594584No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7060.11588683798002346No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6720.11030588544274189No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6640.1089927201398521No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6600.1083361374884072No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6390.10488907856832154No Hit
GTACAGCCAGTTACCCCGAGCAAGCCAGCAC6260.10275518495112562No Hit
TACTATAACGGTAAAGTTCCGTATGATGCAC6230.10226274796254196No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6150.10094958265965218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)