FastQCFastQC Report
Sun 21 May 2023
EGAF00007938057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529484
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT25640.48424503856584905No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24270.45837079118538043No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21750.41077728505488365No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16790.31710117775041363No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16030.3027475806634384No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15860.29953690763082547No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA15060.2844278580655884No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14200.2681856297829585No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13770.26006451564164357No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13010.24571091855466834No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11870.22418052292420546No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10300.19452901315242765No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10240.19339583443503489No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10060.18999629828285652No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9640.18206404726110703No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9470.17885337422849415No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8860.16733272393500087No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8680.1639331877828225No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8610.1626111459458643No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8460.15977819915238234No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8340.15751184171759675No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8180.15449003180454932No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8110.15316798996759107No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC7850.14825754885888903No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6820.12880464754364626No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6490.12257216459798596No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6250.11803944972841483No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6170.11652854477189113No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA5930.11199582990232No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5740.10840743063057617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)