FastQCFastQC Report
Sun 21 May 2023
EGAF00007938058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529484
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30520.5764102409137952No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA26340.4974654569354315No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22210.41946498855489495No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19000.3588399271743811No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17460.3297550067612997No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17290.3265443337286868No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16780.3169123146308482No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15060.2844278580655884No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14970.2827280899894992No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14510.2740403864894879No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14100.2662969985873039No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13460.25420975893511416No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13150.24835500222858484No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12170.22984641651116935No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10990.20756056840244463No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10700.2020835379350462No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10220.19301810819590393No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9510.17960882670675601No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG9370.17696474303283952No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9320.1760204274350122No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9140.17262089128283384No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8940.1688436288915246No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8860.16733272393500087No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8830.16676613457630446No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8730.16487750338064985No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8610.1626111459458643No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8380.1582672941958586No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7700.14542460206540705No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6790.12823805818494988No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6310.11917262844580762No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6190.11690627101102204No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5770.10897401998927257No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5760.1087851568697071No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGG5700.10765197815231432No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5630.10632993631535607No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5330.10066404272839216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)