FastQCFastQC Report
Wed 31 May 2023
EGAF00007938059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521087
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11650.22357111192564771No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10560.20265329973689614No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9390.1802002352774105No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7920.1519899748026721No Hit
GGTACGGTGAGTGGCACGGTCCTTCAGGTCGTAACGGGTGCTAG7760.14891947026120397No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6270.12032539671878208No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6000.11514392030505462No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5830.11188150922974474No Hit
CTGGATATCATCGTCGTCGAACAGGTCTTCGAAATCGTTAAAGA5280.10132664986844807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)