FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521087
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGAACCTACTACTGATTACGGCGGTGACT11630.2231872988579642No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10660.20457236507531373No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9950.19094700117254892No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9550.18327073981887862No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7820.15007090946425453No Hit
CGTTCCTACGACGCCGATGACCGCCTGACCG7670.14719231145662814No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6630.12723403193708535No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6240.1197496771172568No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6040.11591154644042165No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5870.11264913536511179No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5800.11130578962821946No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.11073007002669419No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5390.10343762174070742No Hit
GCCGTGGATGAGATGTTCCCGGAAGGTGCAG5380.10324571520686565No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5290.10151855640228984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)