FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences586996
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26520.45179183503805814No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14620.24906472957226286No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13260.22589591751902907No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12430.21175612781007025No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12160.20715643718185475No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11500.19591274897955013No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11200.1908019816148662No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10230.17427716713572156No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9650.16439635023066596No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8560.14582722880564775No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6820.11618477809048104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)