FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562100
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT27910.49653086639388005No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT27870.4958192492439068No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC27760.4938623020814802No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19670.34993773349937735No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17000.3024372887386586No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16850.2997687244262587No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15410.2741505070272193No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13820.24586372531578013No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13500.24017078811599363No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13390.23821384095356699No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12450.2214908379291941No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9720.17292296744351537No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9190.16349404020636898No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8910.15851272015655576No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7240.1288027041451699No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7010.12471090553282335No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6790.12079701120797011No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6330.112613413983277No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5700.10140544387119729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)