FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562100
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA60631.0786336950720512No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31650.563067069916385No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA29640.527308308130226No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA28520.5073830279309731No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25810.4591709660202811No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19090.3396192848247643No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17670.3143568760007116No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17580.3127557374132717No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16340.2906956057640989No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11180.19889699341754138No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10040.1786159046433019No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9740.17327877601850203No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9110.16207080590642234No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6930.1232876712328767No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6180.10994484967087707No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5780.10282867817114393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)