FastQCFastQC Report
Wed 31 May 2023
EGAF00007938069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558409
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG26650.4772487549448523No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20730.37123327167004827No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20270.36299558209126287No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT17180.3076597977468128No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15410.2759626008893123No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13130.23513231341185403No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10490.18785513843795495No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9570.1713797592803841No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG8450.15132277595812388No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG7430.13305659471820833No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6890.12338626347354717No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6700.11998373951709232No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA6490.11622305514416853No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5940.10637364369127289No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT5750.10297111973481804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)