FastQCFastQC Report
Wed 31 May 2023
EGAF00007938070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558409
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44860.8033538141398152No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA44330.7938625631033884No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC29660.5311518976234265No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21950.39308105707465313No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20000.35816041646893226No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG17530.31392760503501915No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12940.23172978945539918No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8240.1475620915852001No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC7210.12911683013705008No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7060.1264306270135331No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6870.12302810305707824No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA6350.11371593222888599No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG6300.11282053118771367No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5960.10673180410774182No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5960.10673180410774182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)