FastQCFastQC Report
Sun 21 May 2023
EGAF00007938072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553168
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22990.41560610881323573No Hit
ATGTCCAACATGGACATCGATGGTATTAACA10120.18294622971683105No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9280.16776096954270672No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9230.16685708500853266No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8240.14896017123188615No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8140.14715240216353803No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7780.14064443351748473No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7670.1386558875423018No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6030.10900847482139242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)