FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523677
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG54071.0325066787351744No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG53221.0162752994689475No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA37010.7067333489918404No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA32160.61411900847278No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG25820.49305201488703915No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25540.48770520759934083No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16720.31928077803684335No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG15710.2999940803205029No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15600.29789354888605No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14110.26944089581936953No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14100.26924993841623746No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG14050.2682951514005771No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13840.2642850459348033No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG13740.2623754719034825No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13560.25893823864710497No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT12100.23105845778982081No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11940.2280031393397075No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC11690.2232292042614054No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11310.21597282294238623No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA10970.2094802712358954No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10320.19706804003231No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9740.18599251065064917No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG8990.1716707054157429No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8860.1691882591750258No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8700.1661329407249125No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8580.1638414518873275No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8510.1625047500654029No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8360.15964038901842167No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT8300.15849464459962917No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8150.1556302835526479No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8130.15524836874638376No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7610.14531858378351542No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7570.14455475417098707No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7150.13653454323943956No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6980.13328826738619415No Hit
TTTGACGATGTACTTACGGTTGTTGTGAATATAGATACCTTTGT6840.130614863742345No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT6730.12851433230789208No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG6720.12832337490475998No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6710.1281324175016279No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6680.12755954529223165No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6650.1269866730828354No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6510.12431326943898625No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG6490.12393135463272208No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6260.11953933436068416No Hit
GCCCAGGGTGATAGACGTCAGACCGGTCAGAGTGTCCTGCAGGC6250.11934837695755209No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6100.11648401591057084No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5880.112282953041665No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5710.10903667718841958No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5570.1063632735445704No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5430.10368986990072124No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5340.1019712532725325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)